PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031612m
Common NameCICLE_v10031612mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 430aa    MW: 46710.7 Da    PI: 6.7165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031612mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-174897255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Ciclev10031612m 48 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 97
                     59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.14248105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2948104IPR001471AP2/ERF domain
PfamPF008475.0E-114897IPR001471AP2/ERF domain
SMARTSM003803.7E-3248111IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2148105IPR016177DNA-binding domain
CDDcd000181.45E-2948104No hitNo description
PRINTSPR003672.6E-94960IPR001471AP2/ERF domain
PRINTSPR003672.6E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEALRRLNG MPQMPESETS KKNTSTTSNS NKRSLKETGG NVSGTTMRYR GVRRRPWGRY  60
AAEIRDPQSK ERRWLGTFDT AEEAACAYDC AARAMRGMKA RTNFVYPAVA TEAPPHHFIP  120
PFNFSKQSQP SVRAFHTARP FMNPPSFANP VPEEKNSALN LLLLRDLLSN SSSSSSSSSF  180
YTPTTAAAAP PPPHQPLYSF DQQLPFISNN SSSSPTTTSA SSSSGTGAFP MNPTYNHQQQ  240
GFHNTTGTTA ATVVSSTNAT KLVDDHMEFF PQEPSNSGLL QEIIQGFFPE PTSKSNKSCD  300
DDFTKPSSND YCTQAMNSIT APLVSDMSVN MKRASGIKVE PSAVGGFYFD SQGQVGGVGG  360
GGQPSLQNEF GNFNEVITGS QFQSQAVLYG NNELPLNLPL CPESISDDMF QFHQYPELMS  420
AFTARVQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2035104171Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438260.10.0ethylene-responsive transcription factor ESR2
TrEMBLV4TIM50.0V4TIM5_9ROSI; Uncharacterized protein
STRINGXP_006438260.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-14DORNROSCHEN-like