PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10031621m
Common NameCICLE_v10031622mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 428aa    MW: 47004.2 Da    PI: 8.0915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10031621mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.19.7e-11360405655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L++l P+     +k  + ae+L +Ave+Ik+Lq
  Ciclev10031621m 360 SIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ 405
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14357416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.90E-11358409No hitNo description
Gene3DG3DSA:4.10.280.103.2E-13359416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-10360410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7360405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSLLYTPNFK YPEGDLRKNQ EFMDSSAHYD QQNNQLSDSS LTRYRSAPSS FLESLVNSNS  60
GGGNCEDYRY FRPSSPEIDN FLAKYMLPCN GSGDSGSHAS QEFGVKAMKQ EEPEPITEQN  120
EYSNGSSQMV YQNLPVHSVG NDISVNVGNA MDNSYGVASS MALENSMQER MATGNGSNLT  180
RQNSSPAGLF SNLGVDNGFA GMRNGGCFRA CNGTNLEAST SASRLINRVN LSPGSSSRFM  240
PQITETGNQS MGNSSPEKNL VGNNGASRQY VPNFPSDPWD DASFSGVKRA RDSTCNMSFS  300
LDAYETQNGN SGNQSTRLVH HLSLPKTSAE MAAVEKFLHF QGSVPCKIRA KRGCATHPRS  360
IAERVRRTRI SERMRKLQDL FPNMDKQTNT AEMLDLAVEH IKDLQKQVKL LTDKKAKCMC  420
PNKQKLC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438974.10.0transcription factor bHLH130
RefseqXP_006438975.10.0transcription factor bHLH130
TrEMBLV4VHZ00.0V4VHZ0_9ROSI; Uncharacterized protein
STRINGXP_006438974.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1673789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.19e-71bHLH family protein