PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10031750m

Common Name

CICLE_v10031750mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Trihelix

Protein Properties

Length: 396aa MW: 44590 Da PI: 6.0849

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031750m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.4	8.3e-28	81	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk+k+++++ s +++y+++++ Ciclev10031750m 81 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKTKHQDRGS---GSAKMSYYKEID 162 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.4E-5	72	142	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.502	73	137	IPR017877	Myb-like domain
SMART	SM00717	1.3E-5	77	139	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.61E-5	78	148	IPR009057	Homeodomain-like
CDD	cd12203	2.46E-29	79	144	No hit	No description
Pfam	PF13837	9.6E-22	80	164	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MYLSEKPRPY LTEKPRPIDY YKDEAVAVAA AAAAAASSRD MIMEVAAASN GDLQPQQMIL 60 ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK 120 GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA 180 NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG 240 VPPWNWRDPP PGNGGEGQSF GGKVISVKCG DYTRRIGIDG TPDAIKEAIK SAFGIRTKRA 300 FWLEDEDQIV RCIDRDMPVG NYTLHLDEGL TIKVCLYDES DHISVHTEDK TFYTEEDYRE 360 FLARHGWTCL REFDGYRNVD NMDDLRPGAM YRGVT*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MYLSEKPRPY LTEKPRPIDY YKDEAVAVAA AAAAAASSRD MIMEVAAASN GDLQPQQMIL  60
ADSSGGEDHE VRAPKKRAET WVQDETRILI AFRREMDGLF NTSKSNKHLW EQISAKMREK  120
GFDRSPTMCT DKWRNLLKEF KKTKHQDRGS GSAKMSYYKE IDEILKERSK NAQYKATSVA  180
NSANKVDTFM QFSDKGFDDT SISFGPVEAT GRPTLNLERR LDHDGHPLAI TTADAVAAAG  240
VPPWNWRDPP PGNGGEGQSF GGKVISVKCG DYTRRIGIDG TPDAIKEAIK SAFGIRTKRA  300
FWLEDEDQIV RCIDRDMPVG NYTLHLDEGL TIKVCLYDES DHISVHTEDK TFYTEEDYRE  360
FLARHGWTCL REFDGYRNVD NMDDLRPGAM YRGVT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-51	75	160	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00141	DAP	Transfer from AT1G13450	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438124.1	0.0	trihelix transcription factor GT-1 isoform X2
Refseq	XP_006484031.1	0.0	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	V4VFT0	0.0	V4VFT0_9ROSI; Uncharacterized protein
STRING	XP_006438124.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Ciclev10031750m
Entrez Gene	18043759

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]