PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10031937m

Common Name

CICLE_v10031937mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 358aa MW: 39647.5 Da PI: 7.8337

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10031937m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4e-33	17	71	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av++LGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl Ciclev10031937m 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.076	14	74	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-31	15	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.02E-16	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	17	72	IPR006447	Myb domain, plants
Pfam	PF00249	9.5E-9	19	70	IPR001005	SANT/Myb domain
Pfam	PF14379	1.3E-22	117	163	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MGLQNQNMNL VLSTDAKPRL KWTPELHQRF VDAVNHLGGP DKATPKSLMR VMGIPGLTLY 60 HLKSHLQKYR LGKSQHVEAC IDNKQVVEYK ETQSSSDGHV NRNISDGTLN QLNESLQIAQ 120 ALQVQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLKKA QETLAGYSSS SAGVELAKAE 180 LSQLVSMVSM GCPSSSVSEL TEAGTSSLKD FERKQIRSTI CSMESSLTSS ESSGRKEEKQ 240 PVNEIGDTDT CKSNKTTPEL QLMDIHIHPQ DKPCKARSSN QASGRKRRES TISDGFPDEQ 300 QTAKRLATQN EKCDDQLRNT GLVGRFDLNS QYQNESESGS KAIDLNCKGL DQLNGPL*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MGLQNQNMNL VLSTDAKPRL KWTPELHQRF VDAVNHLGGP DKATPKSLMR VMGIPGLTLY  60
HLKSHLQKYR LGKSQHVEAC IDNKQVVEYK ETQSSSDGHV NRNISDGTLN QLNESLQIAQ  120
ALQVQMEVQR KLHEQIEVQR HLQLRIEAQG KYLQSVLKKA QETLAGYSSS SAGVELAKAE  180
LSQLVSMVSM GCPSSSVSEL TEAGTSSLKD FERKQIRSTI CSMESSLTSS ESSGRKEEKQ  240
PVNEIGDTDT CKSNKTTPEL QLMDIHIHPQ DKPCKARSSN QASGRKRRES TISDGFPDEQ  300
QTAKRLATQN EKCDDQLRNT GLVGRFDLNS QYQNESESGS KAIDLNCKGL DQLNGPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-20	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-20	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-20	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-20	17	73	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-20	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438708.1	0.0	myb family transcription factor PHL8 isoform X3
Refseq	XP_006483142.1	0.0	myb family transcription factor PHL8-like isoform X4
Swissprot	F4I274	1e-81	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	V4SVN1	0.0	V4SVN1_9ROSI; Uncharacterized protein
STRING	XP_006438708.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-83	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10031937m
Entrez Gene	18043514

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]