PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032020m

Common Name

CICLE_v10032020mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 342aa MW: 38175.6 Da PI: 6.8056

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032020m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	7.1e-16	54	103	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lre++P++ ++K + a+ L +++eY+++Lq Ciclev10032020m 54 RSKHSVTEQRRRSKINERFQILREIIPHS----DQKRDTASFLLEVIEYVQYLQ 103 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.542	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.28E-18	53	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-22	53	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-13	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-12	54	107	No hit	No description
SMART	SM00353	1.6E-11	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MTSKLKQRMR TTKGNREEEE YEDDEFMSKK EAASNITNSN AKDGKNSDKA SVIRSKHSVT 60 EQRRRSKINE RFQILREIIP HSDQKRDTAS FLLEVIEYVQ YLQEKVQKYE VSYQDWSAEP 120 TKLMPWRNSH WRVQNFATQP HAIKNGSGPG SMFPGKFDDN SISMSPTMLT STQTPVESDP 180 NRDIACKPMD RQPEVANKGI SISMPLQGNL PAPARSDSVL LHPLQRPVSD AQSNECPATT 240 DTMNQQEELT VDGGTINISS IYSQGLLNNL TQALESAGID LSQANISVQI DLGKRANRGL 300 MPEASVAKDL ENPPSINQAM AKLRDVSSGE DSDHSQKRLR K*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MTSKLKQRMR TTKGNREEEE YEDDEFMSKK EAASNITNSN AKDGKNSDKA SVIRSKHSVT  60
EQRRRSKINE RFQILREIIP HSDQKRDTAS FLLEVIEYVQ YLQEKVQKYE VSYQDWSAEP  120
TKLMPWRNSH WRVQNFATQP HAIKNGSGPG SMFPGKFDDN SISMSPTMLT STQTPVESDP  180
NRDIACKPMD RQPEVANKGI SISMPLQGNL PAPARSDSVL LHPLQRPVSD AQSNECPATT  240
DTMNQQEELT VDGGTINISS IYSQGLLNNL TQALESAGID LSQANISVQI DLGKRANRGL  300
MPEASVAKDL ENPPSINQAM AKLRDVSSGE DSDHSQKRLR K*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437848.1	0.0	transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	1e-120	BIM2_ARATH; Transcription factor BIM2
TrEMBL	V4STA9	0.0	V4STA9_9ROSI; Uncharacterized protein
STRING	XP_006437848.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-118	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Ciclev10032020m
Entrez Gene	18045188

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]