PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032039m
Common NameCICLE_v10032039mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Dof
Protein Properties Length: 338aa    MW: 36600.8 Da    PI: 8.9078
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032039mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.6e-3972132262
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                      +e+alkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Ciclev10032039m  72 PETALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 132
                      67899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3156121IPR003851Zinc finger, Dof-type
PfamPF027011.0E-3275130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60976130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MVFSSVPVYL DPPNWQQQQP THHQPQGGGG GIDGSQLPLP PMLPMGSGGG STGAIRPNSM  60
TERARMAKMP QPETALKCPR CESTNTKFCY FNNYSLSQPR HFCKTCRRYW TRGGALRNVP  120
VGGGCRRNKR SKGRNSRSKS PAVTEGQATA GTSSSSALSS RNIIGHMQNP QQQIPMLPHL  180
HHLNDYNSSD IGLNFGGIQI PSQGVACNGN DIGFQVANGT SNCGSILSSG LVEQWKLQQF  240
PFLSSGLEQA TGLYPFDTEN MEPQSYTIGQ LRSKPAALDS EATQFANVKM EENTQSLNLS  300
RNFLGINSAN DHQYWGTNNN AWSDLSGFTS SSTSHLL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436002.10.0dof zinc finger protein DOF3.6
RefseqXP_006486095.10.0dof zinc finger protein DOF3.6
TrEMBLA0A2H5QW370.0A0A2H5QW37_CITUN; Uncharacterized protein
TrEMBLV4T7R30.0V4T7R3_9ROSI; Uncharacterized protein
STRINGXP_006486095.10.0(Citrus sinensis)
STRINGXP_006436002.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-54OBF-binding protein 3