PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032059m
Common NameCICLE_v10032059mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 334aa    MW: 36573.1 Da    PI: 4.4141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032059mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17101149254
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                      + kGVr++k +g+W+AeIrd + +   + r++lg+++t+e Aa+a++  r+++e
  Ciclev10032059m 101 KPKGVRQRK-WGKWAAEIRDpF-K---KGRIWLGTYDTKEAAARAYEIKRLEFE 149
                      78******9.**********66.2...59*********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-11101150IPR001471AP2/ERF domain
SMARTSM003809.7E-16101160IPR001471AP2/ERF domain
PROSITE profilePS5103220.336101160IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16102148IPR016177DNA-binding domain
PRINTSPR003677.1E-8102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-20103153IPR001471AP2/ERF domain
CDDcd000181.87E-21103154No hitNo description
PRINTSPR003677.1E-8124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MPESRKPSKM TRKVRVICND PYATDSSSSE DESERNDTRR RFVREINIPL GPLLTPPQLR  60
TVEAESSFDS SNNNNEVKSQ NPSSKRKKTI LSVTKTPSSN KPKGVRQRKW GKWAAEIRDP  120
FKKGRIWLGT YDTKEAAARA YEIKRLEFEA RAASEKSNAS SSVAVSASNS HNISNDNINN  180
GNNNHPVSSS DDSDSVVSHN SPASVLDLDA ASVATSKEND INIANVNVNE KGDLFEEGFD  240
TNFAELELPF FGFMDQTFVG GSSIEEELNN FFSEGIDCGM PAGDFCSLDD LKVTGVDGDE  300
PSELPDCDFE FEFGTLDFGS LEEQAAPLNI ACV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437667.10.0ethylene-responsive transcription factor ERF119
TrEMBLV4TC940.0V4TC94_9ROSI; Uncharacterized protein
STRINGXP_006437667.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.26e-24ERF family protein