PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032216m
Common NameCICLE_v10032216mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 307aa    MW: 35461.6 Da    PI: 9.2094
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032216mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.32.5e-17898198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     ffkv +p++   ++ l++p kf++++g++   s + tl  ++gr W+v+l  ++  g++++ +GW +F+k   + +g f vFk+d++s+f  +v +
  Ciclev10032216m  8 FFKVILPPSLEHKK-LRIPPKFVRDFGHE--LSEDATLAVPNGRPWRVRL--KRDEGGVWFDDGWYDFAKYYSVSAGYFSVFKYDKNSNF--CVLI 96
                     78888777776665.***********966..8899***************..*********************************99999..9999 PP

                     E- CS
               B3 97 fr 98
                     f+
  Ciclev10032216m 97 FD 98
                     86 PP
2B3421.7e-13215297590
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       +ps++ +++r+++p +fa+++ +  ++s+++++ +e+ + +++++++r ++ ++ l+    e v++ +LkegD+++F+l++++ +
  Ciclev10032216m 215 ILPSSSITHNRVYVPATFAKHFASRDAKSMEVRVSNERHKFMNMNVCWRENG-GFALS--MTELVEDENLKEGDIFIFELISKRVA 297
                      5699***************88888899*******************877765.66666..89*****************9976555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.67E-234102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-244100IPR015300DNA-binding pseudobarrel domain
CDDcd100176.90E-19698No hitNo description
PROSITE profilePS5086312.7747100IPR003340B3 DNA binding domain
PfamPF023622.1E-15898IPR003340B3 DNA binding domain
SMARTSM010193.7E-188100IPR003340B3 DNA binding domain
SMARTSM010190.0069211304IPR003340B3 DNA binding domain
PROSITE profilePS508637.091211306IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-9213295IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-8215300IPR015300DNA-binding pseudobarrel domain
PfamPF023628.6E-12215297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAYRPPQFFK VILPPSLEHK KLRIPPKFVR DFGHELSEDA TLAVPNGRPW RVRLKRDEGG  60
VWFDDGWYDF AKYYSVSAGY FSVFKYDKNS NFCVLIFDFT ACEINYKREE GSKLDKRSRQ  120
SAANYSFENF KAKHKYRECE PQIKKCRKEE LVEKNESDDG GGGGGGDIEY NLWDLLTEMG  180
ICISKKHRAF STVESKRVLK IARSLNLKYP TSLIILPSSS ITHNRVYVPA TFAKHFASRD  240
AKSMEVRVSN ERHKFMNMNV CWRENGGFAL SMTELVEDEN LKEGDIFIFE LISKRVAVLN  300
LSIYHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436970.10.0putative B3 domain-containing protein Os04g0346900
TrEMBLV4TF660.0V4TF66_9ROSI; Uncharacterized protein
STRINGXP_006436970.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3340322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.16e-29B3 family protein