PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032572m
Common NameCICLE_v10032572mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27875.5 Da    PI: 8.1359
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032572mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.3e-32959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Ciclev10032572m  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                     79***********************************************96 PP
2K-box73.46.6e-25751741100
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                      y++ + +++++++++ +++e+ kLk++ e Lq+ qR++ GedL++L l+eL+qLe+qL +sl ++Rs K++  l++++elq+ke++l e+n+ L
  Ciclev10032572m  75 YGTLQANHQSAKETQASYEEYIKLKEKHEALQHLQRQFFGEDLGRLGLEELEQLERQLGSSLGQVRSLKTRNQLDKLSELQRKEEMLLEANNIL 168
                      56788899999*********************************************************************************** PP

            K-box  95 rkklee 100
                      ++klee
  Ciclev10032572m 169 SMKLEE 174
                      ***987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.473161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-42160IPR002100Transcription factor, MADS-box
CDDcd002652.48E-45279No hitNo description
SuperFamilySSF554554.84E-34284IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-33323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-1985172IPR002487Transcription factor, K-box
PROSITE profilePS5129713.48588178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSS  60
PSMHKTLEKY ERCSYGTLQA NHQSAKETQA SYEEYIKLKE KHEALQHLQR QFFGEDLGRL  120
GLEELEQLER QLGSSLGQVR SLKTRNQLDK LSELQRKEEM LLEANNILSM KLEEINAARR  180
SHPWAAEEQN IPYSNQPAHS EGSFGHLHSN GTLHLGHNPG VTAHERTVAT SEQDVHSLIP  240
GWML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-229017219101Developmental protein SEPALLATA 3
4ox0_B5e-229017219101Developmental protein SEPALLATA 3
4ox0_C5e-229017219101Developmental protein SEPALLATA 3
4ox0_D5e-229017219101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.200000.0abscission zone| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7022994e-57KP702299.1 Mangifera indica SEPALLATA1-like protein (SEP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437878.10.0developmental protein SEPALLATA 1 isoform X2
SwissprotQ8LLR21e-100MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLV4STE31e-179V4STE3_9ROSI; Uncharacterized protein
STRINGXP_006437878.11e-180(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3340522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]