PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032584m
Common NameCICLE_v10032490mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28096.2 Da    PI: 8.8489
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032584mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskRr+g lKKA+E+SvLCdaevaviifs++gkl+eys+
  Ciclev10032584m  9 KRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYST 59
                     79***********************************************96 PP
2K-box101.61e-338517411100
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + + ++  e ++Lk++i+ Lq++qRh+lGedLesLslk++qqLeqqL+++lk+iRs+Kn+l+ e+i+elqkkek+++e+n+ L k+++e
  Ciclev10032584m  85 PESQRNWPLECNNLKAKIDLLQKNQRHYLGEDLESLSLKDIQQLEQQLDTALKHIRSRKNQLMQESISELQKKEKSIEEQNNLLVKQIKE 174
                      556789*********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.763161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.91E-41279No hitNo description
SuperFamilySSF554559.81E-34291IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2887172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.26488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGFLK KAHEISVLCD AEVAVIIFSH KGKLFEYSTD  60
SCMEKILERY ERYAYAERQL IAPDPESQRN WPLECNNLKA KIDLLQKNQR HYLGEDLESL  120
SLKDIQQLEQ QLDTALKHIR SRKNQLMQES ISELQKKEKS IEEQNNLLVK QIKEREKAAA  180
QQAQWGNQIQ NQVPNTLSFL LPQPPPCLRL GGAYQEQASE MRRNELNLTL EPVCSCSLGC  240
FAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-21173172MEF2C
5f28_B9e-21173172MEF2C
5f28_C9e-21173172MEF2C
5f28_D9e-21173172MEF2C
6byy_A1e-20174173MEF2 CHIMERA
6byy_B1e-20174173MEF2 CHIMERA
6byy_C1e-20174173MEF2 CHIMERA
6byy_D1e-20174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3389740.0AY338974.1 Citrus sinensis APETALA1 (AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437876.11e-179truncated transcription factor CAULIFLOWER A
RefseqXP_024956095.11e-179APETALA1 isoform X1
SwissprotQ6E6S71e-131AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A2H5NVU31e-178A0A2H5NVU3_CITUN; Uncharacterized protein
TrEMBLV4TMP61e-178V4TMP6_9ROSI; Uncharacterized protein
STRINGXP_006484243.11e-179(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-118MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]