PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032627m
Common NameCICLE_v10032304mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 237aa    MW: 27340.5 Da    PI: 8.0473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032627mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.5e-3288451128
              NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +ekewyfFs+rd+ky++g+r+nrat sgyWkatg+dk+++  +++  g+kk Lvfykgr pkg ktdW+mheyrl
  Ciclev10032627m   8 AEFGEKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAIYG-GSKYLGVKKALVFYKGRPPKGIKTDWIMHEYRL 84 
                      455789**************************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100541.491111IPR003441NAC domain
SuperFamilySSF1019411.2E-397111IPR003441NAC domain
PfamPF023651.2E-141384IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MYENVEKAEF GEKEWYFFSP RDRKYPNGTR PNRATVSGYW KATGTDKAIY GGSKYLGVKK  60
ALVFYKGRPP KGIKTDWIMH EYRLNDPTRQ PYKHNGSMKL DDWVLCRIYK KRQTGSRSVL  120
DAKVEEDQSC VDQLGKTGGY VEHANASDEQ KLMVKFPRTC SLAHLVELEY FAPISQLLND  180
NTYNFNYDFQ NGINNNAASD DQFENKLQPS DMHQVNHSDS LNQQSLFVNP TVYEFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50711765171NO APICAL MERISTEM PROTEIN
1ut4_B3e-50711765171NO APICAL MERISTEM PROTEIN
1ut7_A3e-50711765171NO APICAL MERISTEM PROTEIN
1ut7_B3e-50711765171NO APICAL MERISTEM PROTEIN
3swm_A3e-50711768174NAC domain-containing protein 19
3swm_B3e-50711768174NAC domain-containing protein 19
3swm_C3e-50711768174NAC domain-containing protein 19
3swm_D3e-50711768174NAC domain-containing protein 19
3swp_A3e-50711768174NAC domain-containing protein 19
3swp_B3e-50711768174NAC domain-containing protein 19
3swp_C3e-50711768174NAC domain-containing protein 19
3swp_D3e-50711768174NAC domain-containing protein 19
4dul_A3e-50711765171NAC domain-containing protein 19
4dul_B3e-50711765171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.33180.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1854190.0EF185419.1 Citrus sinensis NAC domain protein (NAC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438726.11e-175NAC transcription factor 29
RefseqXP_015387126.11e-175NAC transcription factor 29 isoform X1
SwissprotK4BWV25e-82NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A067GWB31e-179A0A067GWB3_CITSI; Uncharacterized protein
TrEMBLV4TF671e-179V4TF67_9ROSI; Uncharacterized protein
STRINGXP_006438726.11e-174(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-76NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]