PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032637m
Common NameCICLE_v10032637mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26606 Da    PI: 6.0596
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032637mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41e-193074246
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                     + e+k   qvtfskRr g++ KA EL+vLC+aev +++fs++gk+
  Ciclev10032637m 30 KLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIVVFSPNGKI 74
                     56899999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.1E-302180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.4322181IPR002100Transcription factor, MADS-box
CDDcd002658.96E-352298No hitNo description
SuperFamilySSF554556.93E-262295IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-192343IPR002100Transcription factor, MADS-box
PfamPF003196.2E-223175IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-194358IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-195879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MNNNNNNSNN IDPNNKKKIT KGRQKIQIKK LEDKNSLQVT FSKRRSGLFS KAMELCVLCG  60
AEVGIVVFSP NGKIFLAGHP DFDKILNRYL DQNHSSLDEV NAIPCVQQHN KEYEDATQEL  120
ENEKKRRKMI EEEKKKNKNN GRFWWQEGNI VDDMGIEEVE EYLKAMKKLK GKVEMRVNEM  180
MMDEYLVPNM NLGNDHSDVF GNINVNVNEN ISVSGGIDGG VDFDFGFGEH FN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A4e-162293172Myocyte-specific enhancer factor 2A
3kov_B4e-162293172Myocyte-specific enhancer factor 2A
3kov_I4e-162293172Myocyte-specific enhancer factor 2A
3kov_J4e-162293172Myocyte-specific enhancer factor 2A
3p57_A4e-162293172Myocyte-specific enhancer factor 2A
3p57_B4e-162293172Myocyte-specific enhancer factor 2A
3p57_C4e-162293172Myocyte-specific enhancer factor 2A
3p57_D4e-162293172Myocyte-specific enhancer factor 2A
3p57_I4e-162293172Myocyte-specific enhancer factor 2A
3p57_J4e-162293172Myocyte-specific enhancer factor 2A
5f28_A3e-1622102282MEF2C
5f28_B3e-1622102282MEF2C
5f28_C3e-1622102282MEF2C
5f28_D3e-1622102282MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128EKKRRKM
2123127KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435602.11e-169agamous-like MADS-box protein AGL29
TrEMBLV4T6K71e-167V4T6K7_9ROSI; Uncharacterized protein
STRINGXP_006435602.11e-168(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-29AGAMOUS-like 62