PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032641m
Common NameCICLE_v10032646mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YC
Protein Properties Length: 232aa    MW: 24971 Da    PI: 4.84
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032641mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.33.6e-56391431102
            NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      ql++fw++q   ie+a+dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdf
  Ciclev10032641m  39 QLQMFWSYQrqeIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDF 132
                      89*****998899********************************************************************************* PP

            NF-YC  92 lvdivprdelk 102
                      lvdivprde+k
  Ciclev10032641m 133 LVDIVPRDEIK 143
                      ********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.53E-3327133IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.8E-3753125IPR009072Histone-fold
PfamPF008081.6E-2061124IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MENNQQGQSS SYPPQPPSAA AAATATAPFH HLIQQQQQQL QMFWSYQRQE IEQANDFKNH  60
QLPLARIKKI MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI  120
AAAITRTDIF DFLVDIVPRD EIKDEAAGLG GMVGATASGV PYYYPPMGQP TGTAGPGGMM  180
IGRPAVDPTG VYVQPPSQAW QSVWQTPAGT GDDGSYGSGG SGGPANLDGQ G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5547139395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.196370.0fruit| vegetative tissue
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436849.11e-171nuclear transcription factor Y subunit C-1
RefseqXP_006493208.11e-171nuclear transcription factor Y subunit C-1
RefseqXP_024042168.11e-171nuclear transcription factor Y subunit C-1
SwissprotQ9SMP01e-117NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A067E8S61e-170A0A067E8S6_CITSI; Uncharacterized protein
TrEMBLV4TJW41e-170V4TJW4_9ROSI; Uncharacterized protein
STRINGXP_006493208.11e-171(Citrus sinensis)
STRINGXP_006436849.11e-171(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-112nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2015.
    [PMID:24831307]
  2. Shi H,Chan ZL
    AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway.
    Plant Signal Behav, 2014. 9(7): p. e29109
    [PMID:25763489]
  3. Tang Y, et al.
    Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
    Mol Plant, 2017. 10(2): p. 260-273
    [PMID:27876642]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]