PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032776m
Common NameCICLE_v10032776mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 203aa    MW: 23267.6 Da    PI: 9.4141
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032776mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.56.9e-29441731128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      +p+G+rF P+d+++++ yL  k+ g+k++    ik++d+ +++P+d     + + +e+yf++   +k  +g  ++ +tk+gyW+a g d +v+s
  Ciclev10032776m  44 VPVGIRFFPRDHQVIQPYLLSKILGTKHTPLYPIKDMDLSTFDPNDVVFDERCRANETYFYAWLVNKRGKGMVQRVVTKRGYWEADGVDVPVYS 137
                      599***********************9888788**************865556789*************9999999****************** PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +  vg kk  +fy g++p+g+k+ W m eyr+
  Ciclev10032776m 138 DreMKVMVGFKKNWTFYLGTEPEGQKSAWSMTEYRV 173
                      84444559**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-2943200IPR003441NAC domain
PROSITE profilePS5100529.91344202IPR003441NAC domain
PfamPF023652.4E-1345173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSSLPPASS SSNKILELEE QRSSALKSFN SKNRGRIDFE DGYVPVGIRF FPRDHQVIQP  60
YLLSKILGTK HTPLYPIKDM DLSTFDPNDV VFDERCRANE TYFYAWLVNK RGKGMVQRVV  120
TKRGYWEADG VDVPVYSDRE MKVMVGFKKN WTFYLGTEPE GQKSAWSMTE YRVNPRLIPA  180
DQMNDDVKTR IVSYAVCKIT KA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-164420117164NO APICAL MERISTEM PROTEIN
1ut4_B2e-164420117164NO APICAL MERISTEM PROTEIN
1ut7_A2e-164420117164NO APICAL MERISTEM PROTEIN
1ut7_B2e-164420117164NO APICAL MERISTEM PROTEIN
3swm_A2e-164420120167NAC domain-containing protein 19
3swm_B2e-164420120167NAC domain-containing protein 19
3swm_C2e-164420120167NAC domain-containing protein 19
3swm_D2e-164420120167NAC domain-containing protein 19
3swp_A2e-164420120167NAC domain-containing protein 19
3swp_B2e-164420120167NAC domain-containing protein 19
3swp_C2e-164420120167NAC domain-containing protein 19
3swp_D2e-164420120167NAC domain-containing protein 19
4dul_A2e-164420117164NAC domain-containing protein 19
4dul_B2e-164420117164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437964.11e-151NAC domain-containing protein 45
RefseqXP_006484172.11e-151NAC domain-containing protein 45-like
TrEMBLA0A2H5NWH11e-149A0A2H5NWH1_CITUN; Uncharacterized protein
TrEMBLV4VFG21e-149V4VFG2_9ROSI; Uncharacterized protein
STRINGXP_006484172.11e-150(Citrus sinensis)
STRINGXP_006437964.11e-150(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2298234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12977.11e-21NAC family protein