PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032782m

Common Name

CICLE_v10032782mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 202aa MW: 22415.6 Da PI: 6.8765

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032782m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.6	4.4e-43	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe +r da++s+vyeA+ r+rdPvyG++gv+ +lq+q+++l+ael Ciclev10032782m 42 PCAACKILRRRCVEKCVLAPYFPPTEPQKFVIAHRVFGASNIIKFLQELPEPQRADAVTSMVYEANSRIRDPVYGCAGVVCHLQKQVSELQAEL 135 7******************************************************************************************* PP DUF260 95 allkee 100 a++++e Ciclev10032782m 136 AKAQAE 141 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.077	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.9E-43	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MQITQQYSTP SFSSPRSINA SSSQSSPSFA TPPSPPSIVL SPCAACKILR RRCVEKCVLA 60 PYFPPTEPQK FVIAHRVFGA SNIIKFLQEL PEPQRADAVT SMVYEANSRI RDPVYGCAGV 120 VCHLQKQVSE LQAELAKAQA ELASMQSQQQ NLIALICMEM AQSQEQVLHR HQQQQPPQQF 180 IDTSCFLDEY SLGSTWEPLW T*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-42	41	142	10	111	LOB family transfactor Ramosa2.1
5ly0_B	9e-42	41	142	10	111	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436215.1	1e-146	LOB domain-containing protein 1
Swissprot	Q9LQR0	5e-70	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	V4TCY4	1e-144	V4TCY4_9ROSI; Uncharacterized protein
STRING	XP_006436215.1	1e-145	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-60	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Ciclev10032782m
Entrez Gene	18044144