PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032862m

Common Name

CICLE_v10032862mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

LBD

Protein Properties

Length: 184aa MW: 20418.5 Da PI: 7.9117

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032862m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.7e-40	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+l+rkC + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+++l Ciclev10032862m 23 SCAACKLLKRKCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQQDL 116 6********************************************************************************************* PP DUF260 95 allkee 100 a+++++ Ciclev10032862m 117 AVARAR 122 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.614	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-40	23	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEDMKKWMCY KAMRGHEPRS SSSCAACKLL KRKCIPTCIF APYFRSDEPK KFAKVHKVFG 60 ASNVSKILTE VPEEQREDTV NSLAYEAEAR LRDPVYGCIG AIALLQRKMI ELQQDLAVAR 120 ARLARYTTPA ASSCAVLNDL CVGGSPAFSD LAACGDFFDS FSQNSLELNR VGDMYDFSQV 180 PYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	18	126	6	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	18	126	6	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435777.1	1e-135	LOB domain-containing protein 21
Refseq	XP_006486289.1	1e-135	LOB domain-containing protein 21
Swissprot	Q9SRL8	6e-67	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	V4T709	1e-134	V4T709_9ROSI; Uncharacterized protein
STRING	XP_006486289.1	1e-135	(Citrus sinensis)
STRING	XP_006435777.1	1e-135	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10255	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	3e-69	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Ciclev10032862m
Entrez Gene	18044182

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]