PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032899m
Common NameCICLE_v10032899mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 176aa    MW: 19134.8 Da    PI: 8.7202
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032899mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00154264123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Ciclev10032899m 42 FECKTCNRQFPSFQALGGHRASH 64
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-840111No hitNo description
PfamPF139122.8E-134166IPR007087Zinc finger, C2H2
SMARTSM003550.164264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
PfamPF139124.1E-1088113IPR007087Zinc finger, C2H2
SMARTSM003550.5889111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.41189122IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKRTFQELDH SLNMANCLMF MSQGGHFDAV NSVDMTAAGR VFECKTCNRQ FPSFQALGGH  60
RASHKKPRLT DGTGGGADTQ QSPAKPRTHE CSVCGLEFAI GQALGGHMRR HRAVALHGNE  120
KVSTLTLSDT APLVKKANSR RVLCLDLNLT PYENDLECHR LGSNKAAAPV VDWFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436055.21e-127zinc finger protein ZAT1
RefseqXP_006486058.21e-126zinc finger protein ZAT9-like
TrEMBLA0A2H5NYR71e-128A0A2H5NYR7_CITUN; Uncharacterized protein
TrEMBLV4TCK31e-128V4TCK3_9ROSI; Uncharacterized protein
STRINGXP_006486058.11e-129(Citrus sinensis)
STRINGXP_006436055.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-38C2H2 family protein