PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10032927m
Common NameCICLE_v10032927mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 167aa    MW: 19304.4 Da    PI: 10.1061
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10032927mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.41e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtfskR+ngilKKA+ELSvLCdae+a++ifs++gk y y+s
  Ciclev10032927m  9 KRIENKTNRQVTFSKRKNGILKKAFELSVLCDAEIALVIFSPSGKAYHYAS 59
                     79***********************************************86 PP
2K-box622.4e-2182149875
            K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellle 75 
                      ++ ++  + ++ e++kL++ +e+++  +Rhl GedL+sLs+k+L++Le+qL+ ++++iRskK +++ e
  Ciclev10032927m  82 DQRSRLVQLWKSEIEKLERSVETMEARLRHLTGEDLSSLSIKDLKKLERQLKIGVERIRSKKIKMYDE 149
                      466667899*****************************************************998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.05E-38272No hitNo description
SuperFamilySSF554557.06E-33292IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.5E-313859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-1788151IPR002487Transcription factor, K-box
PROSITE profilePS5129710.66188166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGRGKVELKR IENKTNRQVT FSKRKNGILK KAFELSVLCD AEIALVIFSP SGKAYHYASD  60
HHTMDKIIAR YRREVGQLNS ADQRSRLVQL WKSEIEKLER SVETMEARLR HLTGEDLSSL  120
SIKDLKKLER QLKIGVERIR SKKIKMYDEM APTEAEEQCL WCIPTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-22171169MEF2 CHIMERA
6byy_B1e-22171169MEF2 CHIMERA
6byy_C1e-22171169MEF2 CHIMERA
6byy_D1e-22171169MEF2 CHIMERA
6bz1_A1e-22171169MEF2 CHIMERA
6bz1_B1e-22171169MEF2 CHIMERA
6bz1_C1e-22171169MEF2 CHIMERA
6bz1_D1e-22171169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493218.11e-114truncated transcription factor CAULIFLOWER A-like isoform X3
RefseqXP_024042220.11e-114truncated transcription factor CAULIFLOWER A isoform X1
TrEMBLA0A2H5Q9E71e-119A0A2H5Q9E7_CITUN; Uncharacterized protein
TrEMBLV4TEQ51e-119V4TEQ5_9ROSI; Uncharacterized protein
STRINGXP_006436860.11e-119(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.37e-40MIKC_MADS family protein