PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10032941m

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 163aa MW: 18278.8 Da PI: 9.739

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10032941m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.3	3e-32	69	122	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR Ciclev10032941m 69 PRLRWTPELHLCFVQAVERLGGQDRATPKLVLQFMNIKGLSISHVKSHLQMYRN 122 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.714	65	125	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-30	65	123	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.23E-16	66	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-24	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-10	70	121	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MKGSTDHSTS DHSKKTNHSN KIGTSDPNIY CKSIKGESSS NSSIEETVND QNKAASSGST 60 RQYNRSKTPR LRWTPELHLC FVQAVERLGG QDRATPKLVL QFMNIKGLSI SHVKSHLQMY 120 RNKKIDDPNQ GIFIYFLCHP SLLQILGFCL FLGLKDCHHT FI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-20	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-20	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-20	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-20	70	124	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	70	124	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006486285.1	2e-88	uncharacterized protein LOC102620939
Refseq	XP_024041316.1	2e-88	uncharacterized protein LOC18044186
TrEMBL	A0A067FNE2	1e-118	A0A067FNE2_CITSI; Uncharacterized protein
STRING	XP_006435783.1	1e-118	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	5e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	Ciclev10032941m