PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033303m
Common NameCICLE_v10033303mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 265aa    MW: 30570 Da    PI: 8.1977
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033303mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.23.4e-1498199199
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+k+l++sdv++ gr+vlpkk ae++    +++ ++ + led   +++W++k+++  ++ +gr+++ ++++ F k   L+ gD ++ + +++ e
  Ciclev10033303m  98 FEKQLKNSDVNAAGRIVLPKKLAETYlpPVNEKAGFWMHLEDmDFNKVWTFKFRFwpNN-RGRMYIFENTRAFIKRYCLELGDYIMVY-KDELE 189
                      99*************************9666668899*****5556*******995333.44455566*****************999.33488 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      ++++v++++k
  Ciclev10033303m 190 GSYLVRARKK 199
                      8888888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-2195199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.11E-1996190IPR015300DNA-binding pseudobarrel domain
CDDcd100178.27E-2196198No hitNo description
PROSITE profilePS508638.93898200IPR003340B3 DNA binding domain
PfamPF023621.1E-1098198IPR003340B3 DNA binding domain
SMARTSM010194.2E-1298200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MATLLGIDEE ETVMMPSNAV NGVQVISQDH AEPAGAGCDC SRSRRFRRRV SRSCRPRYQR  60
VAADNPLVFN PRVNRLPVQP PPPPPVREIN PFLMRFLFEK QLKNSDVNAA GRIVLPKKLA  120
ETYLPPVNEK AGFWMHLEDM DFNKVWTFKF RFWPNNRGRM YIFENTRAFI KRYCLELGDY  180
IMVYKDELEG SYLVRARKKG NYVPVHDQSN QVDNNANFPS INLEELVRCG NNYPKHACEV  240
DTSDYAHLIL TPCCESLDFA PDPPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-35941981105B3 domain-containing transcription factor FUS3
6j9b_D2e-35941981105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438851.20.0uncharacterized protein LOC18043546
RefseqXP_015387151.10.0uncharacterized protein LOC107177608
TrEMBLV4TQE10.0V4TQE1_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006438851.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2275334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.18e-36B3 family protein