PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033389m
Common NameCICLE_v10033389mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 127aa    MW: 14954.9 Da    PI: 9.067
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033389mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.51.3e-19311022128
              NAM  22 kvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113
                      kv+g++  el ++i+++++y++eP++L   ++++++ + yfF++ ++  +     nr+t+ g+Wk tgk+  v +k+g +v +k+ L++ k+++
  Ciclev10033389m   3 KVSGRSnGELCQFIRDIELYEYEPSELLsLAYDSGHYKKYFFTRLSHPRR---TINRQTQGGRWKITGKQSYVNDKDGDAVATKTPLTYCKKQD 93 
                      5555553344567**************745666677799****9988654...68999********************************9887 PP

              NAM 114 pkge..ktdWvmheyrl 128
                      p++e  kt+W+m+ey l
  Ciclev10033389m  94 PTSEleKTRWLMKEYML 110
                      766455*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.6031127IPR003441NAC domain
SuperFamilySSF1019417.45E-219127IPR003441NAC domain
PfamPF023653.2E-825109IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNKVSGRSNG ELCQFIRDIE LYEYEPSELL SLAYDSGHYK KYFFTRLSHP RRTINRQTQG  60
GRWKITGKQS YVNDKDGDAV ATKTPLTYCK KQDPTSELEK TRWLMKEYML LKSQQSNQND  120
ETPWTLC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437373.22e-92NAC domain-containing protein 90
TrEMBLV4SS044e-91V4SS04_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006437373.17e-92(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2105323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-08NAC domain containing protein 58