PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10033428m

Common Name

CICLE_v10033428mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 436aa MW: 49287.1 Da PI: 6.3844

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10033428m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	249	296	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r+++ + Er+RR++++++++ Lr l+Pk + K++ a+iL A eYIk+L Ciclev10033428m 249 RAKNLITERNRRNKLKDGLFALRALVPKiS------KMDRAAILGDAAEYIKEL 296 6777899*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.748	247	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.71E-15	249	309	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.2E-10	249	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.48E-11	249	300	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-15	251	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-13	253	302	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MRDLEKAVEW LRPFVDSKAW DYCVVWKLGD DPSSGGVGGG FEYVKVKEES GEEQKFSFCR 60 DAHLKHSART KACEALAQLP SFMDLYSGFL LHFNKVIECL SFNDKTTYLF QISKDQNIIE 120 LVLAHCNTSI EQRVVPAGSS YDVGLDEKCL DILLKENLQN FPSPLQLLTF VPGTQVLSAA 180 TQFNTHPYNE GSSRGSNPSI EHPSFDSNYG YIAQNAPLMQ PIGNSFAKRP KCKSHVFKEE 240 LGERHRLGRA KNLITERNRR NKLKDGLFAL RALVPKISKM DRAAILGDAA EYIKELLQEV 300 DKLQDELKEN EDCEKDNEEM KSFKLDEIHE GTSTTYLPAS EHNKSFPACG EKGKSEVRVE 360 VNQINDRDFL IKLLCEHERG GFVRLMEAIN SLELQVIDAN VTTFNGKVLN ILRVQAHKEN 420 IRLKKLRETL IELTG*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MRDLEKAVEW LRPFVDSKAW DYCVVWKLGD DPSSGGVGGG FEYVKVKEES GEEQKFSFCR  60
DAHLKHSART KACEALAQLP SFMDLYSGFL LHFNKVIECL SFNDKTTYLF QISKDQNIIE  120
LVLAHCNTSI EQRVVPAGSS YDVGLDEKCL DILLKENLQN FPSPLQLLTF VPGTQVLSAA  180
TQFNTHPYNE GSSRGSNPSI EHPSFDSNYG YIAQNAPLMQ PIGNSFAKRP KCKSHVFKEE  240
LGERHRLGRA KNLITERNRR NKLKDGLFAL RALVPKISKM DRAAILGDAA EYIKELLQEV  300
DKLQDELKEN EDCEKDNEEM KSFKLDEIHE GTSTTYLPAS EHNKSFPACG EKGKSEVRVE  360
VNQINDRDFL IKLLCEHERG GFVRLMEAIN SLELQVIDAN VTTFNGKVLN ILRVQAHKEN  420
IRLKKLRETL IELTG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024041036.1	0.0	transcription factor bHLH90
TrEMBL	V4TP13	0.0	V4TP13_9ROSI; Uncharacterized protein
STRING	XP_006438376.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-49	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10033428m
Entrez Gene	18044131