PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033447m
Common NameCICLE_v10033447mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 225aa    MW: 24613.3 Da    PI: 6.3847
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033447mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000117193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Ciclev10033447m 71 YTCTFCRREFRSAQALGGHMNVH 93
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.43E-66898No hitNo description
Gene3DG3DSA:3.30.160.600.0016996IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1577198IPR007087Zinc finger, C2H2
PfamPF139121.7E-57194IPR007087Zinc finger, C2H2
SMARTSM003550.00667193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MAPELGLLSS TQHKKLAQSQ QNQPSPSLSP GKTWMLNQKR EPQEDDDSWE VRAFAEDTGN  60
IMGTTWPPRS YTCTFCRREF RSAQALGGHM NVHRRDRARL HHHQAQPHAS SSSSTLIIPT  120
TQEFTNSGYC LLYQLPNPNG GVFASTTMTA CAIDDSPSTL LSISPYPPNN LIGLPPSTNF  180
PAASQCYSTK DPLGSINDNS NACNESAIEE LDLELRLGQR PTPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136693229superman protein
2l1o_A2e-136693229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4533389e-52HM453338.1 Populus trichocarpa palmate-like pentafoliata 1 transcription factor (PALM1) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436717.11e-167transcriptional regulator SUPERMAN
RefseqXP_006491750.11e-167transcriptional regulator SUPERMAN
TrEMBLA0A2H5QLH41e-166A0A2H5QLH4_CITUN; Uncharacterized protein
TrEMBLV4T9M51e-166V4T9M5_9ROSI; Uncharacterized protein
STRINGXP_006491750.11e-167(Citrus sinensis)
STRINGXP_006436717.11e-167(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-40C2H2 family protein