PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033450m
Common NameCICLE_v10033450mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 127aa    MW: 14550.4 Da    PI: 8.2036
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033450mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR147.27.3e-1549108164
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCka 64 
                      +fYneYAk++GFsvr++ s+ks ++g+++++++vCskeg +++e  +   ++r+r + r gCk 
  Ciclev10033450m  49 EFYNEYAKKAGFSVRINFSRKS-HTGKFVRKEYVCSKEGATTKEVVE---KKRRRGKVREGCKS 108
                      6*******************99.8888**************999766...88999999****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1249108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNDIGVDTGE SYEEAMQEQR DKVYKPVVIP HDHMPRLGQE IVLLDDVHEF YNEYAKKAGF  60
SVRINFSRKS HTGKFVRKEY VCSKEGATTK EVVEKKRRRG KVREGCKSVG LTQFDPTAYI  120
QYAEDS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389930.11e-38protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4TNB01e-88V4TNB0_9ROSI; Uncharacterized protein
STRINGXP_006438076.12e-89(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3343422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-08FAR1 family protein