PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033497m
Common NameCICLE_v10033497mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 585aa    MW: 64351.1 Da    PI: 5.5147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033497mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.7e-07375399730
                      HHHHHHHHHHHHHHHHHHCTSCC.C CS
              HLH   7 erErrRRdriNsafeeLrellPk.a 30 
                      ++ErrRR+++N+++  Lr+++Pk +
  Ciclev10033497m 375 MAERRRRKKLNDRLYMLRSVVPKiS 399
                      79********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.45E-6371399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.95E-6375403No hitNo description
Gene3DG3DSA:4.10.280.104.0E-6375399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.20E-7413454No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MLSRLNGVVW MDGKEEEGSA AWARNNINNN SSNSINNNCN TNNMSCSNNN DNNNGVIENE  60
EEMGSLPGFK SMLEVEDDWY VTGNTSLNNH QDITFPPNLG DPTTDNLLLN AVDSSSSCSP  120
SSSVFNNFDA SQVHYFLPQK NSFSSFMNVV SNNNSLEHGF DLGEMGFLDT QATHALNRGN  180
GGILNGFNDL SANNQMNATN LCSDPQFGTN RTLQFPENGS SSFAGFRGFD ENNGNSLFLN  240
RSKLLRPLET FPSTGAQPTL FQKRAALRKN LGGNEASLGV LGTQNSQLLS GIESDKGKKE  300
LTEDNEKKRK LSISDDLEDV SVDGSGLNYD SDDFLENNKV EEMGKNGGSS SNAISTITGG  360
DQKGKKKGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK VEVRVREGRA VNIHMFCSRR  420
PGLLLSTMRA LDNLGLDIQQ AVISCFNGFA MDVFRAELEG EKSKDTTDGA ADSVNDTSHF  480
NSYKNWHVAL LEGEKSKDTT DGAADSVNDT SHFNSYKNWH IAGQHDFCNS EKKNSTAEIT  540
HLPQLIQLKR QSCSLSFNCL TITSYMKIYL YIATQHKLID STIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364382KKKGLPAKNLMAERRRRKK
2376383ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8121520.0KJ812152.1 Citrus trifoliata inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024041566.10.0transcription factor ICE1
TrEMBLV4TK940.0V4TK94_9ROSI; Uncharacterized protein
STRINGXP_006436946.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19522782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.14e-39bHLH family protein