PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033532m
Common NameCICLE_v10033532mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 212aa    MW: 23665.7 Da    PI: 9.554
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033532mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.1e-055678123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C + F++   L  H+++H
  Ciclev10033532m 56 YSCSFCRREFKSAQALGGHMNVH 78
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-65382No hitNo description
SMARTSM003550.00845678IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1575683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEAQAQYWMW MKRQRDQILK YSFSDSSSSS SWEEKAFAED AAARSLGGCI WPPRSYSCSF  60
CRREFKSAQA LGGHMNVHRR DRARLKNSLN KSTHHKCPSD HSSPSNNVVV VASSPTLLNT  120
RVTAALLTTA KENSSSSFVT INHEDDFVET NLSVGLKPDI WCDKTISCKR AKTSAAVSKS  180
TQPFFMSSDK FSLQKDNLDL ELRLGDPSKM K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-135178229superman protein
2l1o_A4e-135178229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435625.11e-157probable transcriptional regulator RABBIT EARS
TrEMBLV4TBE41e-155V4TBE4_9ROSI; Uncharacterized protein
STRINGXP_006435625.11e-156(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.12e-32C2H2 family protein