PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033544m
Common NameCICLE_v10033544mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 485aa    MW: 54117.3 Da    PI: 9.6837
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033544mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.3e-103333701954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +e+  ++yp+ ++++ LAk++gL+++qV++WF N R +
  Ciclev10033544m 333 YENflHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 370
                      554559******************************88 PP
2BELL94.69e-31205275272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      r e   k +kL+ +leeV+ +Yk y++q+q v++sFe+vaglg+a+pY+s+A kaiS+hF cLk+ai +qi
  Ciclev10033544m 205 RIERSWKTSKLVLMLEEVYWKYKLYCQQMQSVVASFETVAGLGHAAPYISFAFKAISKHFCCLKNAILDQI 275
                      678889***************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008543.7E-1049139IPR000109Proton-dependent oligopeptide transporter family
SMARTSM005741.5E-33152273IPR006563POX domain
PfamPF075262.2E-31157271IPR006563POX domain
PROSITE profilePS5007112.762311374IPR001356Homeobox domain
CDDcd000862.76E-13314375No hitNo description
SMARTSM003891.5E-11314378IPR001356Homeobox domain
SuperFamilySSF466891.75E-17315381IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-26317378IPR009057Homeodomain-like
PfamPF059203.1E-18331370IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MRWGIASLIL STTMAVSIAA FYIRKTCYRF RVPEGCPLTP LFHVAVVLVL NTIPIWVTSL  60
TFRISVAQAS TSSVKQGATM NRKVGNNFRI PPASIYSLGA VANLVLIIFY DKRIGIGMGF  120
SVLAMTVAAF VESKGLKIKS EVRSSVPWGP FTGYASILKR SRFLKPAQRI LDEFCGTLYF  180
DSSGSQVDSF CENPVVRDFI AFSDRIERSW KTSKLVLMLE EVYWKYKLYC QQMQSVVASF  240
ETVAGLGHAA PYISFAFKAI SKHFCCLKNA ILDQIHVSGS KTVSDKNANN DTTEPGCSSH  300
KPVQKLGFLR PPHWRSQRAL PDHAVAVLKT WLYENFLHPY PTDSDKQILA KQTGLSKNQV  360
SNWFINARVR LWKPMVEEVH MLEIGQTQTT AEATNSNFGV PSDHLNTLFP EKLYQATQIL  420
QAEHVPTKHC RNKRAQAPEQ NEEQKNACLS NLPSDQHIGF SGSSGVTLAL ALNQNDGNDL  480
SRPFP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486540.10.0BEL1-like homeodomain protein 9
TrEMBLV4V9G60.0V4V9G6_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006435589.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1761579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-77TALE family protein