PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033578m
Common NameCICLE_v10033578mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 350aa    MW: 37508 Da    PI: 7.5253
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033578mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-1864113255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Ciclev10033578m  64 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAIILYG 113
                      59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1264109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2964121IPR001471AP2/ERF domain
SMARTSM003801.6E-3864127IPR001471AP2/ERF domain
CDDcd000184.21E-2064121No hitNo description
PROSITE profilePS5103222.27364121IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2164122IPR016177DNA-binding domain
PRINTSPR003672.8E-106576IPR001471AP2/ERF domain
PRINTSPR003672.8E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDDSSPHPIQ ENATVTTTNN TKSTDSSTIT TSDNTCNNSS NNNNNNNNNK KCKGKGGPDN  60
SKFRYRGVRQ RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAII LYGSRAQLNL  120
QPSTSSSSSH SSNSTRGGGG GGSSSSNSSQ QTLRPLLPRP TGFGFTFSAS SANPAAGAGL  180
SSSSGLVPYG VYPNIMSVSS ALLCPNIVQV QNQRDMMMQQ QCEIQNYHHH HLQIQQVPDG  240
LNSVSCINDT LAAAASTSSY GNPNHQQQYE QNCLYHDISS IAGSMGSTLS LSTQVAHAPP  300
AEAAAAPNPN MSVGPGSPSI WPLTNEEDYP PTCLWDYTDP FLFDPFFST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1965120359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435774.10.0ethylene-responsive transcription factor ABI4
RefseqXP_006486528.10.0ethylene-responsive transcription factor ABI4
TrEMBLV4V9W40.0V4V9W4_9ROSI; Uncharacterized protein
STRINGXP_006486528.10.0(Citrus sinensis)
STRINGXP_006435774.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.17e-42ERF family protein