PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033719m
Common NameCICLE_v10033719mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 371aa    MW: 42466.4 Da    PI: 4.7574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033719mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.58.7e-2681411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkat 86 
                      lp Gf+F+P+deel+  yLkkkv+g  ++l+e  i+++++y+ +P+++ +        + ++++yfF++ +kk+++g+r  r++    g+W+  
  Ciclev10033719m   8 LPHGFQFRPSDEELIELYLKKKVSGIFIPLAEYfIRDCNLYEEKPSEIWNshggpY-LNADEDLYFFTQLKKKSSKGSRIDRKVGsfGGTWQGE 100
                      699************************9998888**************74345533.3468899******************877678****** PP

              NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033719m 101 DAGKDIVSGqSKIKIGSKKRFRYEK--KGCEDHGAWIMHEYTL 141
                      ******99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-305158IPR003441NAC domain
PROSITE profilePS5100533.9288159IPR003441NAC domain
PfamPF023652.1E-189141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIELYLKKKV SGIFIPLAEY FIRDCNLYEE KPSEIWNSHG  60
GPYLNADEDL YFFTQLKKKS SKGSRIDRKV GSFGGTWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKKGCED HGAWIMHEYT LHLPKNQATN YVLCRLRKNQ PTGHGIMKYG SAKKRKLKDF  180
QDNSNQSEQV ADIEMDRLLT HQQNQQQNYM DYQEVSCSSS DMMSEQSLAG GMGLASSVTE  240
QHSVIDDHMQ QQQSRQISVP NLEFYYGPSM EMMMSHFDQM ICNQQSDSGN NMLQGRETGE  300
NYHCYSESIV EVPMAVPESL VQHEDSDGLP ELIEEDYSFL EDLLHDDAEE PIGDVRCSFG  360
LMLDLDDLLS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-1411606166NO APICAL MERISTEM PROTEIN
1ut4_B3e-1411606166NO APICAL MERISTEM PROTEIN
1ut7_A3e-1411606166NO APICAL MERISTEM PROTEIN
1ut7_B3e-1411606166NO APICAL MERISTEM PROTEIN
3swm_A3e-1411609169NAC domain-containing protein 19
3swm_B3e-1411609169NAC domain-containing protein 19
3swm_C3e-1411609169NAC domain-containing protein 19
3swm_D3e-1411609169NAC domain-containing protein 19
3swp_A3e-1411609169NAC domain-containing protein 19
3swp_B3e-1411609169NAC domain-containing protein 19
3swp_C3e-1411609169NAC domain-containing protein 19
3swp_D3e-1411609169NAC domain-containing protein 19
4dul_A3e-1411606166NAC domain-containing protein 19
4dul_B3e-1411606166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437271.10.0NAC domain-containing protein 19
TrEMBLV4TL180.0V4TL18_9ROSI; Uncharacterized protein
STRINGXP_006437271.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.11e-15NAC domain containing protein 96