PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033728m
Common NameCICLE_v10033728mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 169aa    MW: 18937.6 Da    PI: 7.4414
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033728mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.9e-182774249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +ie+ s r v fskR++g++ KA EL  LCda++av+i s++g+l+ +
  Ciclev10033728m 27 KIEDASSRIVAFSKRKKGLFNKAGELHRLCDANIAVVIQSPSGRLFSF 74
                     69*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-231877IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.6891878IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.81E-241994IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-172040IPR002100Transcription factor, MADS-box
PfamPF003192.0E-192774IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-174055IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-175576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAMEMTNANS NKKKPCGKGR RKVEIRKIED ASSRIVAFSK RKKGLFNKAG ELHRLCDANI  60
AVVIQSPSGR LFSFGKPSAD HVIDKFLRDA GYNHQSKEET EDMEESTELG GGGGGGVEYW  120
WEESTEGLSL EELKKYMDSL EALRNNVAIK LEEMMMRRAC ERDLLSFI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11226KKPCGKGRRKVEIRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436064.11e-121agamous-like MADS-box protein AGL29
RefseqXP_006486495.11e-121agamous-like MADS-box protein AGL29
TrEMBLA0A2H5NYU21e-120A0A2H5NYU2_CITUN; Uncharacterized protein
TrEMBLV4VAM81e-120V4VAM8_9ROSI; Uncharacterized protein
STRINGXP_006486495.11e-121(Citrus sinensis)
STRINGXP_006436064.11e-121(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-21AGAMOUS-like 29