PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033744m
Common NameCICLE_v10033744mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 328aa    MW: 37480.8 Da    PI: 4.8856
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033744mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.32.2e-2181291128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdke 91 
                      lp Gf+F+P+deel+ +yLkkkv+g  ++l+e  i++   y++    L+      ++++yfF++ +kk+++g+r  r++    g+W+     k+
  Ciclev10033744m   8 LPHGFQFRPSDEELIEHYLKKKVSGIFIPLAEYfIRD---YSHGGPFLN-----ADEDLYFFTQLKKKSSKGSRIDRKVGssGGTWQGEDAGKD 93 
                      699************************9997754555...555555675.....6789*******************75544899********* PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033744m  94 IVSGeSKIKIGSKKRFRYEK--QGCEDHGAWIMHEYTL 129
                      *99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.94E-265146IPR003441NAC domain
PROSITE profilePS5100528.0598147IPR003441NAC domain
PfamPF023652.3E-199129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKV SGIFIPLAEY FIRDYSHGGP FLNADEDLYF  60
FTQLKKKSSK GSRIDRKVGS SGGTWQGEDA GKDIVSGESK IKIGSKKRFR YEKQGCEDHG  120
AWIMHEYTLH LPKNQATNYV LYRLRKNQPS GHDIMKYGSA KKRKLKDFQD NSNQSEQVAD  180
IEMDRLFTSQ QNQQQNYMDY QEVSCSSSDM MSEQSLAGGM GLASSVYEPS MEMMMSHFDQ  240
MICNQQYDSG NNVLQDRETG ENYHCHSESI VEVPMAVPKS LVQHEDSDGL PELIEEDYSF  300
LEDLLQEPIG DVRGSFGLML DLDDLLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437303.10.0NAC domain-containing protein 83
TrEMBLV4TL450.0V4TL45_9ROSI; Uncharacterized protein
STRINGXP_006437301.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.14e-14NAC domain containing protein 96