PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033792m
Common NameCICLE_v10033792mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 557aa    MW: 62476.6 Da    PI: 8.6714
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033792mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.41.8e-13322405186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +Liea  ++  rl+rg l++++W+ev++ +  re g+  +++ +qCk++++ l+k+yk +k+          s++p++ +l+
  Ciclev10033792m 322 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 405
                      7*************************************998889876789*****************9998886......5799999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS513759.219102136IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.2E-4105134IPR002885Pentatricopeptide repeat
PfamPF138125.1E-4125183IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.78137171IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.429172206IPR002885Pentatricopeptide repeat
PfamPF128541.1E-7207235IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.972207241IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.8E-5210238IPR002885Pentatricopeptide repeat
PfamPF138376.4E-26320407No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSLLRKLPTK FLIPQSVLVT RSFTKSGAFP DEPTSAYYDD LVNAAGHERD LETVRYLLNK  60
RARDCCFNTA NTFNFITNTE NSLSVLSDLC RTLARLDKGF PRKSAYDTLI ARLCKLKKID  120
EALRVVDIMA EGGFGLSAIT FHPILSVLTR GKRMEEAWGL MEVMTEIRVS PDLTAYNYLL  180
TAYCFKGNLT ATSGVLKKME EEKLGADART YDALVLGACR AGRVEEAFVL LRRMVDDGQS  240
VLYSTYAHVM GALLRLGYYA QAVKFVMVCG GRDIKLDTEL FGSLGSKLIG LESNAAREME  300
LRGSHNVRGT HAATTGGGRE DCWSEGATGT LIEAWGDRYV RLNRGHLRQK DWKEVAESVN  360
SRENGVKPKK TDIQCKNRID TLKKKYKIEK AKPPPSKWPF YYRLDSLIGN DAVSSKKPAN  420
ITLRVKSKPR TSFVGRSVST ENDNLSSDGE ADDDGDDDEI VVKKVHRMED VDLSDGAACR  480
ELARAILKFG EIYERIESAK QKQMMELEKE RLEFIKDVEC ERMNMFMGAQ LEIQKSKRKQ  540
RPASSDVLSL EALHDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A2e-223328418435pentatricopeptide repeat protein dPPR-U10
5i9g_C2e-223328418435pentatricopeptide repeat protein dPPR-U8C2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.87660.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU9478002e-45KU947800.1 Toxicodendron vernicifluum microsatellite c27082 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388203.10.0pentatricopeptide repeat-containing protein At3g56030, mitochondrial-like
RefseqXP_024042222.10.0pentatricopeptide repeat-containing protein At3g56030, mitochondrial-like
SwissprotQ9LY431e-89PP283_ARATH; Pentatricopeptide repeat-containing protein At3g56030, mitochondrial
TrEMBLV4TH050.0V4TH05_9ROSI; Uncharacterized protein
STRINGXP_006435776.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM780022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.11e-65sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]
  2. Carrie C,Venne AS,Zahedi RP,Soll J
    Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(9): p. 2691-708
    [PMID:25732537]