PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033847m
Common NameCICLE_v10033847mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 278aa    MW: 30837.1 Da    PI: 4.7632
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033847mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-191766255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+++taeeAa+a+++a+  l+g
  Ciclev10033847m 17 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 66
                     789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.04E-311673No hitNo description
SuperFamilySSF541712.55E-191774IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-271773IPR001471AP2/ERF domain
SMARTSM003808.5E-351780IPR001471AP2/ERF domain
PROSITE profilePS5103219.5331774IPR001471AP2/ERF domain
PfamPF008473.1E-141766IPR001471AP2/ERF domain
PRINTSPR003676.8E-81829IPR001471AP2/ERF domain
PRINTSPR003676.8E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEEAALSLCG GRRGRKRFVG VRQRPSGRWV AEIKDTIQKI RVWLGTYDTA EEAARAYDEA  60
ACLLRGANTR TNFWPCSLSS STRPPALPSR ITNLLLHRLK ARNSRNDQPT ATSIAMTQDQ  120
EAANNLLEDT GQSADNYFNV AQESNRITSN DYCVIDGFDS SFNSSTSTSV HTSTTGDNNW  180
STNNIGYDEN EGTNCKKEKI DSRFVDALGA ASACTYEYSP FEIAQEMMGS MEKEDGSSSS  240
EDEGDPTMQL IRETMKRMKY ERNSQLLCML SMESLSV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438759.10.0ethylene-responsive transcription factor RAP2-2
TrEMBLV4VHD50.0V4VHD5_9ROSI; Uncharacterized protein
STRINGXP_006438759.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1961567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-13related to AP2 11