PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033879m
Common NameCICLE_v10033879mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 454aa    MW: 51547.9 Da    PI: 4.5308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033879mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.45.5e-2781411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      lp Gf+F+P+deelv +yLkkk++g +++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk+++g+r  r++    g W+   
  Ciclev10033879m   8 LPHGFQFRPSDEELVEHYLKKKISGIPIPLAEYfITDCNLYDKKPSEIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssGGAWQGED 101
                      699************************9998888**************632455333478899******************75544899***** PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033879m 102 AGKDIVSGqSKIKIGSKKRFRYEK--KGCEDHGAWIMHEYTL 141
                      *****99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-325158IPR003441NAC domain
PROSITE profilePS5100534.7928159IPR003441NAC domain
PfamPF023655.2E-199141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LVEHYLKKKI SGIPIPLAEY FITDCNLYDK KPSEIWDSHG  60
GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSGGAWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKKGCED HGAWIMHEYT LHLPKNQATN YVLCRLRKNQ PTGQDKKFCS AKKRKLKDFQ  180
ENNNQSEQVT DSEMERVLTH QQNRQQNDVH YQEVSCSSTG MMSEQSLSGG MGFASSVAEH  240
SAVTDQMQQH QCQQILIQNS ECHYEPSMEM MMSNFDQMLY NQQCDSGNNM LQSRETGGNC  300
HCDSESIADA MAVPESLVQQ EDCDALPELI EEDYSFLEEL LCNDAQEPIG DGESIDETDG  360
MDHSSTVAEK QFEAFVVVLD QSVQNSSLQE NQQQRECQSK ETFAISSDHD YESSISQRRE  420
SGGVDYELES IHQLLLSGQN DCDLMLDLEH IWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-15815615165Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015387713.10.0NAC transcription factor 56-like
TrEMBLV4TAK70.0V4TAK7_9ROSI; Uncharacterized protein
STRINGXP_006437042.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03200.14e-18NAC domain containing protein 45