PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033936m
Common NameCICLE_v10033936mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 105aa    MW: 12137 Da    PI: 6.5907
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033936mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.4e-1222814298
                     TS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
               B3 42 sgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98
                     +g++We+ +     +k+     +++ Wk F+ +n+Lk+gD +vF+l+  r ++ +++v+++r
  Ciclev10033936m 22 KGKEWEMVYLGedfQKRN--KRFGSEWKTFAIDNKLKVGDACVFELMeCRnDCLKFRVQILR 81
                     89*******667444444..45899********************88767799999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.335183IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-121083IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-121981IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-102082IPR003340B3 DNA binding domain
CDDcd100171.63E-102381No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
ILPAEMRRIL PSKTIPAFLV YKGKEWEMVY LGEDFQKRNK RFGSEWKTFA IDNKLKVGDA  60
CVFELMECRN DCLKFRVQIL RGDIPSKFED NTNSENEDTT IIVG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437349.23e-72B3 domain-containing protein Os04g0386900
TrEMBLV4SRX83e-71V4SRX8_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006437348.15e-72(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1865456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.17e-07B3 family protein