PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033942m
Common NameCICLE_v10033942mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family LFY
Protein Properties Length: 399aa    MW: 44468.3 Da    PI: 7.8355
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033942mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY637.32.4e-19413771385
          FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.....leaaaaaaark..lr.....eleelfkayGvryltvakiaelGftvstLvdmk 82 
                      mdpeaf+aslfkwdpr ++a+ppar++ e++ ++++     +    aaaa++  +r     +leelf+ayG+ry t+akiaelGftv+tL+dmk
  Ciclev10033942m   1 MDPEAFTASLFKWDPRVVVAPPPARVQLEQVSQPPAvplgaA----AAAAYSalVRprelgGLEELFQAYGIRYHTAAKIAELGFTVNTLLDMK 90 
                      9******************9***9999888776665443321....222222223366777********************************* PP

          FLO_LFY  83 deelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelva 175
                      deeld++m+sl ++fr++llvGeryGikaavraerrrl+e++   +rr++ls+d++t a+dalsqeglseepvq+ keaagsgg+g   +e++ 
  Ciclev10033942m  91 DEELDEMMNSLGHLFRWELLVGERYGIKAAVRAERRRLDEDD--LRRRHFLSSDTTTnAVDALSQEGLSEEPVQQDKEAAGSGGGG--PWEVAE 180
                      ****************************************87..78888898887766************************9999..787765 PP

          FLO_LFY 176 aeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqki 269
                      ++        kk++ +k  r      ++  d + e+e+d+de g+g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+i
  Ciclev10033942m 181 KK--------KKQRGRKGPRP-----RKVVDVNLEDENDDDEYGGGCGGMERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNI 261
                      44........23311111111.....2345777888899999**************************************************** PP

          FLO_LFY 270 akerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahp 363
                      akerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahp
  Ciclev10033942m 262 AKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHP 355
                      ********************************************************************************************** PP

          FLO_LFY 364 rLsiWYvPtkLrqLChlerska 385
                      rL iWYvPt+LrqLCh+er+ a
  Ciclev10033942m 356 RLGIWYVPTRLRQLCHAERNGA 377
                      *******************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016981.6E-2041376IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDPEAFTASL FKWDPRVVVA PPPARVQLEQ VSQPPAVPLG AAAAAAYSAL VRPRELGGLE  60
ELFQAYGIRY HTAAKIAELG FTVNTLLDMK DEELDEMMNS LGHLFRWELL VGERYGIKAA  120
VRAERRRLDE DDLRRRHFLS SDTTTNAVDA LSQEGLSEEP VQQDKEAAGS GGGGPWEVAE  180
KKKKQRGRKG PRPRKVVDVN LEDENDDDEY GGGCGGMERQ REHPFIVTEP GEVARGKKNG  240
LDYLFHLYEQ CRDFLIQVQN IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC  300
YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLGIW  360
YVPTRLRQLC HAERNGAGAA ASSSVSAGAE HSVILKPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1092163752161PROTEIN LEAFY
2vy2_A1e-1092163752161PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ9953490.0DQ995349.1 Citrus reticulata LEAFY (LFY) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436969.10.0floricaula/leafy homolog
RefseqXP_006485166.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
TrEMBLA0A067F3520.0A0A067F352_CITSI; Uncharacterized protein
TrEMBLA0A2H5PJA80.0A0A2H5PJA8_CITUN; Uncharacterized protein
TrEMBLV4VCY40.0V4VCY4_9ROSI; Uncharacterized protein
STRINGXP_006485166.10.0(Citrus sinensis)
STRINGXP_006436969.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79072841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-149floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]