PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10033957m
Common NameCICLE_v10033957mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 340aa    MW: 38775.4 Da    PI: 4.8379
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10033957mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.78.6e-2781411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatg 87 
                      lp Gf+F+P+deel+ +yLkkkv+g  ++l+e  i+++++y+ +P+++       + + ++++yfF++ +kk+++g+r  r++    g+W+   
  Ciclev10033957m   8 LPHGFQFRPSDEELIEHYLKKKVSGIFIPLAEYfIRDCNLYEKKPSEIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssGGTWQGED 101
                      699************************9998888**************632455333478899******************75544899***** PP

              NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k+++s  ++ ++g kk + + k  +    +  W+mhey+l
  Ciclev10033957m 102 AGKDIVSGqSKIKIGSKKRFRYEK--QGCEDHGAWIMHEYTL 141
                      *****99745667********984..4444589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-315158IPR003441NAC domain
PROSITE profilePS5100535.0448159IPR003441NAC domain
PfamPF023652.0E-199141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKV SGIFIPLAEY FIRDCNLYEK KPSEIWDSHG  60
GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSGGTWQGE DAGKDIVSGQ SKIKIGSKKR  120
FRYEKQGCED HGAWIMHEYT LHMPKNQATN YVLCRLRKNQ PTGHDIMKNG SAKKRKLKGF  180
QDNSNQSEQV ADIEMDRLLT HQQNQQQNCM DYQEVSWSSS DMMSEQSLAG GMGLASSVYE  240
PSMEMMMSHF DQMICNQQYD SENNMLQGGE TGENYHCHSE SIVEVPMAVP ESLVQHEDSD  300
GLPELIEEDY SFLEDLLQEP IGDVRGSFGL MLDLDDLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-15816015171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437305.10.0NAC domain-containing protein 83
TrEMBLV4TFZ50.0V4TFZ5_9ROSI; Uncharacterized protein
STRINGXP_006437305.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13879326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.13e-17NAC domain containing protein 96