PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000091

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Dof

Protein Properties

Length: 163aa MW: 17640.8 Da PI: 8.2115

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000091	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	95.4	4.1e-30	7	66	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++a kcprC+s +tkfCyynny+ sqPr++Ck+C ryWt GG l nv +Ggg+ ++kk+s Cla000091 7 SDAFKCPRCHSLHTKFCYYNNYNYSQPRHLCKTCCRYWTLGGLLCNVSIGGGTHRSKKNS 66 56789************************************************9999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-18	2	64	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-26	9	64	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.856	10	64	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	12	48	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
QNIQSKSDAF KCPRCHSLHT KFCYYNNYNY SQPRHLCKTC CRYWTLGGLL CNVSIGGGTH 60 RSKKNSKAKT AIVRDSPPSN SAVLRSDLEM FSIMLKLNQA GDWCGWIENG RELDGGIVGA 120 ARDSTVEGSG SSDHLATSGG NEGMVEISVA SPSMEVPGSN SMN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445935.1	3e-46	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q8LDR0	3e-23	DOF54_ARATH; Dof zinc finger protein DOF5.4
TrEMBL	A0A1S3BDV3	7e-45	A0A1S3BDV3_CUCME; dof zinc finger protein DOF3.4-like
STRING	XP_008445935.1	1e-45	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21361	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-25	DOF zinc finger protein 1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu P,Chen H,Ying L,Cai W AtDOF5.4/OBP4, a DOF Transcription Factor Gene that Negatively Regulates Cell Cycle Progression and Cell Expansion in Arabidopsis thaliana. Sci Rep, 2016. 6: p. 27705 [PMID:27297966] Ramirez-Parra E, et al. The transcription factor OBP4 controls root growth and promotes callus formation. New Phytol., 2017. 213(4): p. 1787-1801 [PMID:27859363] Rymen B, et al. ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. Plant Physiol., 2017. 173(3): p. 1750-1762 [PMID:28167701]