PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000111

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

HD-ZIP

Protein Properties

Length: 196aa MW: 22589.9 Da PI: 8.6529

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000111	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	65	119	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Le+ F++n++++ +++e LA+ l+L+ rqV vWFqNrRa+ k Cla000111 65 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSK 119 78889************************************************98 PP
2	HD-ZIP_I/II	115.9	2.3e-37	65	153	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+sF+++++L+p++K++la+ L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ l+e+n+rL+keveeLr + Cla000111 65 RKKLRLTKEQSHLLEQSFRQNHTLNPKQKETLAEVLKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGLLTEQNKRLQKEVEELR-A 153 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.1E-19	45	119	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-19	48	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.637	61	121	IPR001356	Homeobox domain
SMART	SM00389	3.5E-18	63	125	IPR001356	Homeobox domain
CDD	cd00086	7.19E-17	64	122	No hit	No description
Pfam	PF00046	2.0E-16	65	119	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	96	119	IPR017970	Homeobox, conserved site
SMART	SM00340	8.7E-21	121	164	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	6.6E-9	121	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAILPTTSSR LDLSISVPGF NSFSSPLPPS VGRDLDMNKA PDEEEWMMGS MEEDEENNNG 60 SNNPRKKLRL TKEQSHLLEQ SFRQNHTLNP KQKETLAEVL KLKPRQVEVW FQNRRARSKL 120 KQTEMECEYL KRWFGLLTEQ NKRLQKEVEE LRAMKVAPPT VISPHSCEPL PASNLTMCPR 180 CERVTTTALD KTRIVV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	121	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681905	2e-80	LN681905.1 Cucumis melo genomic scaffold, anchoredscaffold00033.
GenBank	LN713264	2e-80	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011654500.1	1e-137	PREDICTED: homeobox-leucine zipper protein HOX3-like isoform X1
Swissprot	Q0JKX1	4e-77	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q8S9N6	1e-76	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
Swissprot	Q9XH38	4e-77	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A0A0KJE2	1e-135	A0A0A0KJE2_CUCSA; Uncharacterized protein
STRING	XP_004142329.1	1e-135	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9506	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	3e-75	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]