PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000121
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 321aa    MW: 36213.2 Da    PI: 8.5889
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000121genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12151198355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + h  +ErrRR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Cla000121 151 QDHILAERRRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 198
                57999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.866148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-12153202No hitNo description
SuperFamilySSF474597.2E-17153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEDNGFVNQW HKSSMDELGM LPLAATFGEN LQHSYAQTNI DQKASLNHSH NAILGYVKQL  60
KSDGWSSYQT TNHLPNSQVI AYPTASVSAS NYTNQMDFTR PKEEVVCPQS ISNLPSDMLV  120
SQGSLAYQSH VTKSNRGTRS PSTNSRIPQA QDHILAERRR REKLSQRFIA LSAIVPGLKK  180
MDKASVLGDA IKYLKQLQEK VKILEEQTRR KDIESVVFVK KSQVFADGNN TSKEEDEPLP  240
EIEARFCDKN VLIRIHCEKK KDVLEKTITE IEKLHLTIVN SSVMSFGSLA LDITIIAQMD  300
NEFCLTLKDL VKKLQSTLRS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14152201857Transcription factor MYC2
5gnj_B1e-14152201857Transcription factor MYC2
5gnj_E1e-14152201857Transcription factor MYC2
5gnj_F1e-14152201857Transcription factor MYC2
5gnj_G1e-14152201857Transcription factor MYC2
5gnj_I1e-14152201857Transcription factor MYC2
5gnj_M1e-14152201857Transcription factor MYC2
5gnj_N1e-14152201857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERRRRE
2157162RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455093.10.0PREDICTED: transcription factor bHLH18-like isoform X2
RefseqXP_016901719.10.0PREDICTED: transcription factor bHLH18-like isoform X2
SwissprotQ9T0721e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S3BZP10.0A0A1S3BZP1_CUCME; transcription factor bHLH18-like isoform X2
STRINGXP_008455092.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-64bHLH family protein