PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000141

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 219aa MW: 23253.7 Da PI: 6.6231

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000141	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F ++ L H++ H Cla000141 67 YECQYCYREFANSQALGGHQNAH 89 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.1E-5	62	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.22E-6	63	94	No hit	No description
Pfam	PF13912	1.1E-5	67	91	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.676	67	94	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MAALEDHYQT KQNNNNNPTT RLKLFGFDVQ EDLEDDSAPT PSASSDSGGG LGPTTAAAGP 60 SSGDRKYECQ YCYREFANSQ ALGGHQNAHK KERQQLKRAQ LQASRNAAVF RNPIVSAFVP 120 PPHLLPSAAV TSSSSWPVYI PRAPPQFQVS HGCVFTPSSY ADAPPPPSPP DFFTMGSRSA 180 HGMVDAPTSL SRFSKVDGGT GFDDGPGLDL HLSLAPAAP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for the initiation of inflorescence trichomes in response to gibberellin and cytokinin. Acts upstream of GIS, GIS2, ZFP8, and the trichome initiation factors GL1 and GL3. Binds the promoter region of GIS and GIS2, which may be direct targets of GIS3. {ECO:0000269\|PubMed:25640859}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM095654	1e-154	KM095654.1 Cucumis sativus multicellular trichome development C2H2 zinc finger transcription factor (Gl-3) mRNA, complete cds.
GenBank	LN681895	1e-154	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	1e-154	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008467196.1	1e-125	PREDICTED: zinc finger protein 6-like
Swissprot	Q9C9H1	6e-52	GIS3_ARATH; Zinc finger protein GIS3
TrEMBL	A0A1S3CSY8	1e-124	A0A1S3CSY8_CUCME; zinc finger protein 6-like
STRING	XP_008467196.1	1e-124	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3198	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-13	C2H2 family protein

Publications ? help Back to Top
Sun L, et al. GLABROUS INFLORESCENCE STEMS3 (GIS3) regulates trichome initiation and development in Arabidopsis. New Phytol., 2015. 206(1): p. 220-30 [PMID:25640859]