PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000181
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 330aa    MW: 37421.5 Da    PI: 8.5351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000181genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-06174193120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C++C+ksF+r  n++ H+
  Cla000181 174 FTCSICNKSFNRYNNMQMHM 193
                89*****************9 PP
2zf-C2H210.80.0015258280123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk+   k + ++H +++
  Cla000181 258 FMCRKCGKTLAVKGDWRTHEKNC 280
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-6160197No hitNo description
PfamPF128748.7E-5174193No hitNo description
PROSITE profilePS5015710.928174201IPR007087Zinc finger, C2H2
SMARTSM003550.042174196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-6174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM00355190221253IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.89E-5243282No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4254278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355100258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGLRNHMADD NIFCLQSPTF IEWLKPHNPS PSPSISLSSS SSSISDRDLI SQTSVQCVNT  60
GLVPDQQHEF FVSSRCLPLF TETEALPKND KELGARAQDH ERKYLGIKEE NEDMEKVEVG  120
LHIGLPNVGD GKNLNVCVKK EEVSCLKKSF SNFNNQGRFW IPTQAQILVG PMQFTCSICN  180
KSFNRYNNMQ MHMWGHGSEY RKGPESLRGT QPAAMLRLPC YCCAQGCKNN INHPRAKPLK  240
DFRTLQTHYK RKHGSKPFMC RKCGKTLAVK GDWRTHEKNC GKLWYCSCGS DFKHKRSLKD  300
HIRSFGKGHS PCSSLDDECL TGSDQEDHFT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819281e-177LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132661e-177LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461629.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-110ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S3CF210.0A0A1S3CF21_CUCME; zinc finger protein WIP3
STRINGXP_008461629.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-109WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]