PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000320
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB
Protein Properties Length: 257aa    MW: 29414.9 Da    PI: 8.7843
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000320genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l+++v  +G+ +W++Ia+++  gR++k+c++rw++ 
        Cla000320 12 RGHWRPAEDTKLKELVSVYGPQNWNLIAEKVE-GRSGKSCRLRWFNQ 57
                     899*****************************.***********996 PP
2Myb_DNA-binding56.85.2e-1864108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r ++T+eE+e+l +a+  +G++ W+ Iar ++ gRt++ +k++w+ +
        Cla000320  64 RRAFTEEEEERLMQAHGIYGNK-WAMIARLLP-GRTDNAVKNHWHVL 108
                      678*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25758IPR017930Myb domain
SMARTSM007171.8E-131160IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-2812105IPR009057Homeodomain-like
PfamPF002491.8E-151257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-261365IPR009057Homeodomain-like
CDDcd001672.34E-121556No hitNo description
PROSITE profilePS5129427.4359113IPR017930Myb domain
SMARTSM007172.1E-1463111IPR001005SANT/Myb domain
PfamPF002491.7E-1464108IPR001005SANT/Myb domain
CDDcd001671.86E-1166109No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2166112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MVMGSKSKVC GRGHWRPAED TKLKELVSVY GPQNWNLIAE KVEGRSGKSC RLRWFNQLDP  60
RINRRAFTEE EEERLMQAHG IYGNKWAMIA RLLPGRTDNA VKNHWHVLMA RNCRQQHFTA  120
YRRRNLTHPL PLPHAQPSSY PPSRVNHMPS HLIPPGSETC NEMEVISSYS CHKTSSDDEN  180
QSCDTHYRPS YTRINMQQRS NYNYNNSHRQ IQNNNTTPWD HIILGSEGSS SVSEENGVGS  240
SDLVEPGFID FLGVGAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32121137108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning (PubMed:19542355, PubMed:21533201). Functions in both lateral organ separation and axillary meristem formation, in part through genetic interaction with the NAC domain genes CUC2 and CUC3 and the homeobox gene STM (PubMed:19542355). May be recruited by a variety of developmental programs for the development of floral organs and the initiation of ovule outgrowth (PubMed:21533201). {ECO:0000269|PubMed:19542355, ECO:0000269|PubMed:21533201}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441713.11e-120PREDICTED: transcription factor MYB44 isoform X1
SwissprotQ9LQX54e-70MY117_ARATH; Transcription factor MYB117
SwissprotQ9SEZ42e-70MY105_ARATH; Transcription factor MYB105
TrEMBLA0A1S3B4201e-118A0A1S3B420_CUCME; transcription factor MYB44 isoform X1
STRINGXP_008441713.11e-119(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.14e-72myb domain protein 117
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Colling J, et al.
    Hypersensitivity of Arabidopsis TAXIMIN1 overexpression lines to light stress is correlated with decreased sinapoyl malate abundance and countered by the antibiotic cefotaxime.
    Plant Signal Behav, 2016. 11(4): p. e1143998
    [PMID:26967827]