PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000540
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Dof
Protein Properties Length: 248aa    MW: 27286.2 Da    PI: 8.733
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000540genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.96e-402180261
     zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
               +e+al+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+ 
  Cla000540 21 PEQALRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRP 80
               7899*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-271974IPR003851Zinc finger, Dof-type
PfamPF027016.7E-342379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5812579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLAISCPKVQ QENRKPMRPQ PEQALRCPRC DSTNTKFCYY NNYSLSQPRY FCKSCRRYWT  60
KGGTLRNVPV GGGCRKNKRP SPSTSSSSSP SSKRSHDQAA NSSRLMLTDT HLPSLAFEST  120
DLSLAFAKLQ HQSNGQIGLF DTTHNNFHNL YSGFGTGSSG EVENGGFPHF ENYNGSGVAS  180
TATATAMKQE LVCNGDQNNM VLLGFPWQFN NNGDGNYMGD LDAGRESWNF NGNGIASSWH  240
GLLNSPLM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819220.0LN681922.1 Cucumis melo genomic scaffold, anchoredscaffold00082.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149558.11e-168PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBLA0A0A0KHN11e-167A0A0A0KHN1_CUCSA; Uncharacterized protein
STRINGXP_004163372.11e-168(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50263051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.19e-41TARGET OF MONOPTEROS 6