PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000688

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

CAMTA

Protein Properties

Length: 115aa MW: 13806.5 Da PI: 9.675

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000688	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	161	2.3e-50	13	115	3	104
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e ++rwlk+ e+ iL+n+e+++lt+e++++p+sgsl+L+n++++r+frkDG+sw+kk+dg+tv E+he+LKvg+ e+l+cyYah+e+np+fqrr+yw+ Cla000688 13 REaQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWM 112 55599*********************************************************************************************** PP CG-1 102 Lee 104 L++ Cla000688 113 LDQ 115 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	66.95	8	115	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.0E-57	11	115	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.8E-43	14	115	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 115 aa Download sequence Send to blast
MMNAGYDIND LYREAQTRWL KPPEVFFILQ NHENYQLTEE APKQPTSGSL FLFNKRVLRF 60 FRKDGHSWRK KRDGRTVGEA HERLKVGNAE ALNCYYAHGE HNPNFQRRSY WMLDQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681925	2e-54	LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBank	LN713265	2e-54	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004140640.1	5e-75	PREDICTED: calmodulin-binding transcription activator 4
Swissprot	Q9FYG2	4e-57	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A0A0KCA8	1e-73	A0A0A0KCA8_CUCSA; Uncharacterized protein
STRING	XP_004140640.1	2e-74	(Cucumis sativus)
STRING	XP_004166127.1	2e-74	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14241	18	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-59	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]