PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000703
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 415aa    MW: 45440.5 Da    PI: 4.7919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000703genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.48e-16176222455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  Cla000703 176 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 222
                6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-20169232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-20169232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.86172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-17175226No hitNo description
PfamPF000102.7E-13176222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.3E-18178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDHSIPNNCD GNACTSSTWT LPTAAVSSSS PPDDISLFLQ QILLRSSSSA PHSSLLSPSP  60
SIFSELTCNI RAFTPSTHNI PPPYGPSNAV PDEISAVDSS EQFANSSSSG VLHDPLRSCP  120
TPIPPNASST SVGASDHNEN DEFDCESEEG LEALVEEQPT KPNPRSSSKR SRAAEVHNLS  180
EKRRRSRINE KMKALQNLIP NSNKTDKASM LDEAIEYLKQ LQLQVQMLSM RNGLSLHPMN  240
LPGSLQYLQL SHMRMDFGEE NSSMSSDQER PNQIFLSLPD QKTASIHPFM SDIGRTNAET  300
PFELTPPIQA QLVPFYLSES SKSKEICSRD VLRGDHQVNM NVSQSETTPF MSHPYNISAP  360
PDLQGLKNCV SVEPSIIEGN RSGVLLNYTP EHSLVFPSPL NGIDTGRPTE TTELQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-162LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-162LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142005.20.0PREDICTED: transcription factor SPATULA
TrEMBLA0A0A0KLD30.0A0A0A0KLD3_CUCSA; Uncharacterized protein
STRINGXP_004157205.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-39bHLH family protein