PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000713
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 296aa    MW: 33273.3 Da    PI: 6.5266
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000713genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.29.9e-37101012102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw+++g++f+v+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F++g+kell+ki+
     Cla000713  10 FLTKTYQLVDDPSTDDVVSWNQSGSTFIVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFQRGHKELLSKIR 97 
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Cla000713  98 RRKA 101
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-59699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-33799IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.3E-38799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAHRSLPAPF LTKTYQLVDD PSTDDVVSWN QSGSTFIVWK TADFARDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFQRGHK ELLSKIRRRK AVMISQPLQT VHPAKSGGGG  120
NSSPANSGED IGSTSTSSPD SKNPGSVEMG TVAQFADLTE ENEKLKKDNE MLNSELVQTK  180
KQCDELVAFL TDYLKVAPDQ ISRIMRQEGN NRDSSQCNDG ADLKSEGKVN EEEEEEEEEE  240
DGETLKLFGV WLKGKKEKKM KRGRDEKMGC SKAPHAKAMK SVEMHAPLMR SSNLCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2559925129Heat shock factor protein 1
5d5v_B2e-2559925129Heat shock factor protein 1
5d5v_D2e-2559925129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-170LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-170LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022950044.11e-170heat shock factor protein HSF24-like
RefseqXP_022950046.11e-170heat shock factor protein HSF24-like
SwissprotP223351e-110HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1S3B0S01e-162A0A1S3B0S0_CUCME; LOW QUALITY PROTEIN: heat shock factor protein HSF24
STRINGXP_004141916.11e-156(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-82heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]