PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla000807

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

YABBY

Protein Properties

Length: 186aa MW: 20701.8 Da PI: 7.9306

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla000807	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.9	1.4e-55	9	170	4	167
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +sseq+ yvqC+ C+til+v+vP++ l++vv vrCG C+ llsvn+ak s ll++ sh l + ++++ l+s +++ +++++ Cla000807 9 ADSSEQIRYVQCGLCSTILLVNVPYSNLSMVVSVRCGNCSGLLSVNMAKPSfipfDLLTSLSH--------NLFNVGQKHYCLDSLSNTSDLITSYHNII 100 679*****************************************99988444444455444........44556666666777777777766666665 PP YABBY 100 klsenedee..vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 + e++d+ +p +p v++PPek+qr+Psayn+fikeei+r+ka+nP ++h+eaf +aaknWah+P++ Cla000807 101 HNHEDDDDViiIPPTPVVNKPPEKKQRAPSAYNQFIKEEIRRLKAENPAMAHKEAFKTAAKNWAHLPPVN 170 544444444114555669***********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-54	11	170	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-9	116	168	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-6	120	168	IPR009071	High mobility group box domain
CDD	cd00084	4.59E-6	127	168	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSTVEQLLAD SSEQIRYVQC GLCSTILLVN VPYSNLSMVV SVRCGNCSGL LSVNMAKPSF 60 IPFDLLTSLS HNLFNVGQKH YCLDSLSNTS DLITSYHNII HNHEDDDDVI IIPPTPVVNK 120 PPEKKQRAPS AYNQFIKEEI RRLKAENPAM AHKEAFKTAA KNWAHLPPVN AAAGVDHMTM 180 RKKNVM

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143066.2	1e-109	PREDICTED: axial regulator YABBY 4-like
Swissprot	Q9LDT3	9e-50	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A0A0LK60	1e-108	A0A0A0LK60_CUCSA; Uncharacterized protein
STRING	VIT_01s0127g00330.t01	2e-59	(Vitis vinifera)
STRING	XP_004143066.1	2e-59	(Cucumis sativus)
STRING	XP_004172999.1	2e-59	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-48	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]