PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000827
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YA
Protein Properties Length: 204aa    MW: 23476.3 Da    PI: 9.8465
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000827genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-3298155158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e e++++  +rkpylheSRh hA+rR+Rg+gGrF
  Cla000827  98 EEPVYVNAKQYHGILRRRQSRAKAEVENRISRSQRKPYLHESRHLHAMRRERGCGGRF 155
                69*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.6E-3496158IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.44597158IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.1E-2799155IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-24100122IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860102122IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-24132155IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MMSPEIDYRN RRDCDNQQIT NYTTDNSQPW RYWHGGATTI ADMSKEEKAY WAWSKGFVDS  60
GPRPKTNTKA MQITLSPPRE YNSIMAQGRM ALPLAMAEEP VYVNAKQYHG ILRRRQSRAK  120
AEVENRISRS QRKPYLHESR HLHAMRRERG CGGRFVSKKK KAETRVSMDD DDVEGSNIST  180
LGSESMCNGS SYYQASQLHL SAYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2198161264NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818808e-49LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBankLN7132628e-49LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008460780.15e-75PREDICTED: nuclear transcription factor Y subunit A-7-like
SwissprotQ84JP12e-31NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A1S3CEE51e-73A0A1S3CEE5_CUCME; nuclear transcription factor Y subunit A-7-like
STRINGXP_008460780.12e-74(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.13e-35nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]