PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla000929
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 653aa    MW: 70341.8 Da    PI: 6.6269
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla000929genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11262318155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Cla000929 262 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 318
                57*******************4444.2455535555.779999**************98 PP
2AP246.87.3e-15361412155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cla000929 361 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 412
                57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8262318IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14262328IPR016177DNA-binding domain
CDDcd000185.74E-19262328No hitNo description
PROSITE profilePS5103217.319263326IPR001471AP2/ERF domain
SMARTSM003807.9E-23263332IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-12263327IPR001471AP2/ERF domain
PRINTSPR003673.3E-6264275IPR001471AP2/ERF domain
PfamPF008479.1E-10361412IPR001471AP2/ERF domain
CDDcd000183.02E-24361422No hitNo description
SuperFamilySSF541719.81E-18361422IPR016177DNA-binding domain
SMARTSM003801.5E-33362426IPR001471AP2/ERF domain
PROSITE profilePS5103219.045362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-18362421IPR001471AP2/ERF domain
PRINTSPR003673.3E-6402422IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MGSINWLGFS LSPQHQPSDH PPAAAPFTSD QISPSDVSAV CFDNLPSSYG VYEPFNRNNH  60
SQDWNSMKGL GSTQSSDFSA LIETQHQPKL ENFLGHHSFT DHDHAAAAVY TNASANYMFQ  120
NCSLELPSEA GGGGGGGRPN AGNGNTNNTS SIGLSMIKTW LRNQPAPPQA VTKSGGDHDG  180
VVGIGNNITS PHTLSLSMNT GPPPQSQSSG SAALPLLTAN GGESSSSDNK QGKSSAAELD  240
AENGAVEAAP RKSVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ TRKGRQGGYD  300
KEEKAARAYD LAALKYWGTT TTTNFPISDY EKELEDMKHM TRQEFVASLR RKSSGFSRGA  360
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD  420
MSRYDVKAIL ESNTLPIGGA AKRLKDIDHS DIPLDPQRTD DTITSHLSDG IITTTTAPYS  480
GGGWPTLAFH HHPYAFHYPY ATPQQRLWCK QEHDTTAIAA DNFFPHGGAM DSMDHSSGSS  540
SVVYSSGNGD GYSGNFLIPM GAGGAEGSSS NNNNSGLGDM GEVNLFGSCS NVDDPYNATR  600
TTNLYNYHNP SHQLQPPPLS SGLQGSSCNN WLPPARSVCH GGAPPPFTIW NDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818461e-177LN681846.1 Cucumis melo genomic scaffold, anchoredscaffold00009.
GenBankLN7132591e-177LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138981.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ8LSN21e-139BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0A0LKQ90.0A0A0A0LKQ9_CUCSA; Uncharacterized protein
STRINGXP_004138981.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-123AP2 family protein